Probiotics and Prebiotics for Depression

 By: Dr. Eeks, MD, MPH

Probiotics and prebiotics for depression: The connection between the microbiome and mood.  

Guess what? You are never alone. None of us are.

It may not be comfortable to think about, but tons of tiny organisms live inside us and affect our health. The microbiome refers to all of the microorganisms that live in our body. The term microbiota refers to specific populations of microorganisms in specific body parts, such as the gut microbiota. The gut microbiota is huge. There are 10 to 100 times more microorganisms living in each of our guts than our total number of human cells. There are more than 1000 species and 7000 subspecies, so next time you are lonely, think about all your gut buddies.

But what’s the link to depression? 

A growing body of research shows that the gut microbiota affects our physical and mental health in many ways, including being linked to depression. Depression is associated with an altered gut microbiota. Jiang et al analyzed fecal samples from both depressed individuals and individuals who weren’t depressed. Results showed that the depressed individuals’ fecal samples contained increased amounts of harmful bacteria and reduced amounts of beneficial bacteria. This should get us thinking about how we can use probiotics for depression.

The type and quantity of microorganisms that make up the gut microbiota are affected by our environment, diet, stress, use of antibiotics and even cleaning products and disinfectants. While our focus is depression, alterations in the gut microbiota are linked to obesity, metabolic syndrome, irritable bowel syndrome, autoimmune disorders, allergies, autism and neurological issues. That’s important to note, since chronic health issues can exacerbate an underlying depression.

Research shows that microorganisms in the gut interact with the brain in a bidirectional way. The gut has its own nervous system, the enteric nervous system, often call our second brain because it can function independently of our “real” brain. The enteric nervous system directly communicates with the central nervous system through both the sympathetic nervous system and the vagus nerve, part of the parasympathetic nervous system. The sympathetic nervous system is responsible for gut motility, blood flow, immune cell activation and barrier function. The vagus nerve signals the gut when to “rest and digest” and communicates with the enteric nervous system through multiple nerve endings. The vagus nerve collects information on the health of the gut, including microbial content, and sends this information to the brain. Vagus means “wanderer,” and in many ways, it “wanders” around the gut, like a vagabond, collecting information. Alterations in the gut microbiota are sensed by the vagus, communicated to the brain, and have been linked to changes in mood. Studies on animals in which either bacteria were removed from the gut lumen or the vagus nerve severed show that depression, anxiety and stress significantly increase.


Some microorganisms that make up the gut microbiota can directly produce neuroactive chemicals, such as serotonin, GABA, dopamine and norepinephrine, which can directly affect the central nervous system. The production of these neuroactive chemicals depends on substrates, essentially food, which depends on our diet. Our diets, and even short term dietary changes, can directly influence the types and quantity of bacteria that reside in our gut.  The walls of a healthy gut form a tight barrier and prevent harmful bacteria and toxins from entering the circulatory system. Damage to the walls can cause increased permeability or a “leaky gut.” Leaky guts enable neurochemical-producing bacteria to enter the circulatory system, thereby creating systemic effects, one possibility being symptoms of depression.

Probiotics & Mood:

Probiotics are living microorganisms that, in adequate doses, yield health benefits for the host. They are often referred to as “good” bacteria and ingesting them may improve the gut microbiota and restore homeostasis. Ingesting probiotics does not automatically translate into health benefits. The dose, strain and durability matters, and more research on these characteristics is warranted. It is theorized that probiotics (and prebiotics discussed below) improve the health of the gut microbiota by promoting the growth of “good bacteria” and limiting the growth of potentially pathogenic bacteria; improving the gut barrier function, and improving overall host immunity.

Some studies show that probiotic consumption improves depressive symptoms. In rats, the probiotic strain Bifidobacterium infantis is shown to significantly reduce stress and depressive symptoms, and the strain Lactobacillus rhamnosus is shown to significantly reduce depressive symptoms after 28 days of use.  There are a few quality studies on humans with mixed results. I’ll mention two here, each a randomized, placebo controlled, double blind study (RCT), since such a study design is considered the highest level of evidence. One 8-week study compared a probiotic capsule with Lactobacillus helveticus and Bifidobacterium longum with a placebo in individuals with low mood. Results showed no significant differences from the control group in subjective measures or biochemical markers. Another 8-week long randomized, double blind, placebo controlled study showed that supplementing with probiotics significantly reduced depressive symptoms in individuals diagnosed with major depressive disorder. This study is important for three reasons: 1) The study was placebo-controlled

2) Participants were required to have an official diagnosis of major depression, meaning they couldn’t self-select into the study. This improves accuracy.

3) Results showed that probiotics also improved metabolic biomarkers, such as insulin sensitivity.

What foods contain probiotics?

Unless altered, most fermented foods contain probiotics. Fermentation is the process by which microorganisms (probiotics being one type) break down carbohydrates into alcohol or acids. Fermented foods were a staple of our ancestors. Before refrigeration and the science of fermentation was understood, food naturally fermented. Therefore, much like the Mediterranean diet, fermented foods are considered part of a traditional diet, or the diet human beings have been eating since the beginning of mankind.

Today you can find many superfoods and functional foods with probiotics, since it’s a booming wellness trend. There are also a ton of supplements in capsule and powder formation. I do not take a probiotic supplement and instead try to get a healthy dose from my diet. While I struggled with depression in the past, I didn’t consciously include probiotics in my diet for depression. I started doing it because I was having irritable bowel symptoms, and nothing was helping. I was bloated and would get sharp abdominal pains after eating any meal. Sometimes when I moved, even just a little bit, my gut sounded sloshy like a big ol’ swamp. I cut back on gluten, artificial sweeteners, chewing gum and started eating more probiotics. In about three weeks, I noticed a significant change and started to feel a lot better. Years later, learning about their  potential antidepressant effect was a bonus.

Probiotics Food List:

Yogurt with live, active cultures
Some types of cheese ( But make sure it’s from a dairy farm that puts the cows first, please!)
Pickles ( not in vinegar)


Prebiotics are ingredients that create health benefits by increasing the composition and/or activity of specific microflora. All prebiotics are classified as fiber, but not all fiber is prebiotics. For a food ingredient to be classified as a prebiotic, three conditions must be met:

1) The ingredient must resist gastric acidity, hydrolysis by enzymes and absorption in the upper GI tract . This means it can’t be digested.

2) The ingredient is fermented by the intestinal microflora

3) The ingredient selectively stimulates the growth and/or activity of intestinal bacteria associated with well-being. Most prebiotics stimulate the growth of Lactobacilli and Bifidobacteria, and it is no coincidence those two are in a lot of probiotic supplements.

Like probiotics, prebiotics were heavily consumed by our ancestors. For example, archeological evidence shows that early hunter/gatherer societies ingested high quantities of inulin, a prebiotic fiber found in early dessert plants.  Research strongly supports inulin as an effective prebiotic, although it has been known to create bloating and gas. A good, tasty source of inulin is Jerusalem artichokes Acacia, the gum from the Acacia tree, is also a good source of prebiotics and fiber. Studies suggest it is one of the more tolerable prebiotics, so if you struggle with gas or bloating, try Acacia. Wheat dextrin, a type of prebiotic fiber, has been shown to increase Bifidobacteria and decrease colonies of harmful bacteria in the gut. A randomized controlled trial showed that supplementing with 2 bananas a day produced more Bifidobacteria in the gut, although the result was not statistically significant from the control group that supplemented with water. Bananas contain several prebiotic carbohydrates. The group supplementing with bananas, however, did show a statistically significant reduction in side effects, such as bloating, which, by itself, is a great reason to add more bananas to your diet.

Prebiotics Food List:

Jerusalem Artichokes
Supplements (Inulin, Acacia, Wheat dextrin)

An Interesting Note on Premenstrual Syndrome & the Microbiome:

Premenstrual syndrome can exacerbate underlying depression. Research shows that calcium significantly reduces PMS symptoms, including low mood. Studies show that prebiotics may increase calcium absorption. If you suffer from PMS and want to manage it naturally, I recommend loading up on prebiotic foods and calcium at least two weeks before your expected period.

A Note on Probiotics and Post-Partum Depression:

Depression is common after giving birth. Post-partum depression can be dangerous, so if you suspect it in you or someone you love, I highly recommend getting professional help. This study refers more to preventing depression during pregnancy: A randomized, double blind, placebo-controlled study showed that pregnant women who supplemented with Lactobacillus rhamnosus HN001 through pregnancy and six months after giving birth had significantly reduced symptoms of depression and anxiety than the control group.

A Note on Anxiety:

While the focus of this blog is probiotics for depression, eating fermented foods with probiotics is also associated with a significant reduction in anxiety. The same pathway would be in play.

In conclusion, I hope this blog helps shed some light on gut bacteria, prebiotics and probiotics for depression. Depression is complicated and will most likely require a multipronged approached. But for what it’s worth, adding probiotics and prebiotics to your diet can’t hurt.

Thanks for reading my scoop on probiotics for depression. Feel free to leave comments below or find me on Instagram and Facebook. I try to have active discussions on both.

XO, Eeks




From the blog: Cell Phones, Wireless & Risk in Pregnancy?


Read Dr. Stair’s novel Manic Kingdom, based on a true, provocative, mind-blowing story!  Her new parody on the wellness industry, Yours in Wellness, Krystal Heeling, is also available on Amazon.

Manic Kingdom by Dr. Erin Stair


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